Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
← Dataset search

PRJNA484015

BioProject

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

47/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Amplicon sequencing (halite metagenome). F grade, do not reuse. Poor Q30 base quality (74.2%) and extreme duplication (59.94%) severely compromise data integrity; these metrics indicate either sequencing failure or severe PCR bias that would distort abundance estimates and phylogenetic inference.

Data type / assay
amplicon
Organism
halite metagenome
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
N numbers (samples, groups)
132 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 38296080916 reported
total reads 127052614 reported
n content pct 0 measured
pct q20 bases 85.6 measured
pct q30 bases 74.2 measured
gc content pct 59.9 measured
mean read length 251 measured
mean base quality 32 measured
adapter content pct 0.04 measured
duplication rate pct 59.94 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 47/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 74.2 measured ×1 21%
adapter content pct 0.04 measured ×0.5 100%
QC cost 1 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0

Scientific quality

Based on hands-on reproduction of the papers that use this dataset. A reproducible paper that stands on this data is positive evidence; a flagged one is a prompt to look closer — never a verdict on the dataset itself without the evidence.

1 studies use it 1 flagged mean score 57