PRJNA488070

BioProject first seen 2019

Provenance — who produced it, who reused it

Linked to 2 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

2 further papers cite this accession but reuse could not be confirmed.

Deep data QC

80/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

WGS

Organism

Klebsiella pneumoniae

Instrument

NextSeq 500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

86 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 91634967036 reported

total reads 330270953 reported

n content pct 0 measured

pct q20 bases 92.2 measured

pct q30 bases 84.5 measured

gc content pct 54.9 measured

mean read length 145 measured

mean base quality 32.7 measured

adapter content pct 0 measured

duplication rate pct 14.95 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 80/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 84.5 measured ×1 73%

duplication rate pct 14.95 measured ×0.5 78%

adapter content pct 0 measured ×0.4 100%

QC cost 7 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0