Corpus 1,277 assessed · 1,178 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
← Dataset search

PRJNA492959

BioProject first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Arabidopsis amplicon-seq on NextSeq 500 produces 12 billion bases (40.9 million reads) with high quality (96% Q30 bases), enabling confident targeted analysis of plant genetic variation. The excellent quality and model-organism context support fine-scale population genetics, genotype–phenotype associations, and marker validation in this extensively annotated plant.

Data type / assay
amplicon
Organism
Arabidopsis
Instrument
NextSeq 500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
30 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 12091158337 reported
total reads 40924427 reported
n content pct 0 measured
pct q20 bases 98.6 measured
pct q30 bases 96 measured
gc content pct 35.9 measured
mean read length 150 measured
mean base quality 39.4 measured
adapter content pct 0 measured
duplication rate pct 99.73 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96 measured ×1 100%
adapter content pct 0 measured ×0.5 100%
QC cost 22 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0