Corpus 1,276 assessed · 1,177 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJNA497427

BioProject first seen 2019

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Senecavirus A amplicon-seq on NextSeq 500 yields 561 million bases (1.9 million reads) with excellent quality (96.5% Q30 bases), enabling confident viral sequence analysis. The high quality and targeted approach suit viral population genetics, quasispecies analysis, or validation of viral sequences in clinical or laboratory-adapted isolates.

Data type / assay
amplicon
Organism
Senecavirus A
Instrument
NextSeq 500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 561839188 reported
total reads 1911125 reported
n content pct 0.009 measured
pct q20 bases 98.9 measured
pct q30 bases 96.5 measured
gc content pct 51.8 measured
mean read length 147 measured
mean base quality 35 measured
adapter content pct 0 measured
duplication rate pct 94.35 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96.5 measured ×1 100%
adapter content pct 0 measured ×0.5 100%
QC cost 15 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0