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Provenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
1 further paper cites this accession but reuse could not be confirmed.
Deep data QC
33/100 · FStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
WGS
Organism
Lactobacillus crispatus EX533959VC13
Instrument
454 GS FLX Titanium
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
2 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
92868243
reported
total reads
561882
reported
n content pct
0.046
measured
pct q20 bases
12.1
measured
pct q30 bases
12.1
measured
gc content pct
59
measured
mean read length
263
measured
mean base quality
6.3
measured
adapter content pct
0
measured
duplication rate pct
25.5
measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 33/100
The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
12.1
measured
×1
0%
duplication rate pct
25.5
measured
×0.5
45%
adapter content pct
0
measured
×0.4
100%
QC cost
5 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0