Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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PRJNA504683

BioProject first seen 2019

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

62/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Whole-genome sequencing of the Eurasian bullfinch (Sinosuthora webbiana bulomacha) using Illumina HiSeq 2000, producing 3.9 billion short reads and over 1 trillion bases for avian genomic reference and population genetics. Supports phylogenomic reconstruction, chromosomal synteny analysis, and identification of adaptive variants in wild bird populations; the 42.9% GC content and moderate Q30 rate (75.4%) are typical for non-model organism WGS. High sequencing depth provides sufficient coverage for copy-number and structural variant calling in passerine genomes.

Data type / assay
WGS
Organism
Sinosuthora webbiana bulomacha
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
85 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 1033571760386 reported
total reads 3852227701 reported
n content pct 0.033 measured
pct q20 bases 87 measured
pct q30 bases 75.4 measured
gc content pct 42.9 measured
mean read length 152.7 measured
mean base quality 31.6 measured
adapter content pct 0 measured
duplication rate pct 1.53 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 62/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 75.4 measured ×1 27%
duplication rate pct 1.53 measured ×0.5 100%
adapter content pct 0 measured ×0.4 100%
QC cost 52 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0