Corpus 1,277 assessed · 1,178 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJNA505088

BioProject first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

77/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

MiSeq whole-genome sequencing of Limosilactobacillus reuteri (probiotic bacterium) with 1.16 million short reads and 300 Mb at exceptional quality (98.9% Q20, 98.6% Q30). Adequate for complete bacterial genome assembly; redundant depth relative to typical 100-200 Mb requirement for closed genomes.

Data type / assay
WGS
Organism
Limosilactobacillus reuteri
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 300504919 reported
total reads 1161442 reported
n content pct 0.007 measured
pct q20 bases 98.9 measured
pct q30 bases 98.6 measured
gc content pct 39.2 measured
mean read length 128.4 measured
mean base quality 37.9 measured
adapter content pct 0 measured
duplication rate pct 36.27 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 77/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 98.6 measured ×1 100%
duplication rate pct 36.27 measured ×0.5 12%
adapter content pct 0 measured ×0.4 100%
QC cost 28 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0