Corpus 1,277 assessed · 1,178 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJNA505886

BioProject first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This amplicon dataset of Haemophilus parainfluenzae on an Illumina HiSeq 2500 platform generated 8 million reads with 91.3% Q30 bases, capturing bacterial strain diversity and respiratory tract community composition. Researchers studying respiratory microbiota, otitis media pathogenesis, or pathogenic versus commensal Haemophilus ecology will find amplicon sequence data suitable for population analysis. The 54.9% GC content is typical for Haemophilus species.

Data type / assay
amplicon
Organism
Haemophilus parainfluenzae
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
3 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 2153271536 reported
total reads 7750995 reported
n content pct 0.134 measured
pct q20 bases 93.9 measured
pct q30 bases 91.3 measured
gc content pct 54.9 measured
mean read length 67.7 measured
mean base quality 33.8 measured
adapter content pct 0.26 measured
duplication rate pct 28.95 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 91.3 measured ×1 100%
adapter content pct 0.26 measured ×0.5 100%
QC cost 6 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0