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Provenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
1 further paper cites this accession but reuse could not be confirmed.
Deep data QC
insufficient data to scoreStandardized, field-standard QC computed by touching the data — every metric states how it was obtained
Data type / assay
ATAC-seq
Organism
Homo sapiens
Instrument
AB SOLiD System
Platform
ABI_SOLID
Read type
hybrid (short+long)
Files available
FASTQ (raw reads), BAM/CRAM (aligned)
N numbers (samples, groups)
11,696 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
81930054333129
reported
total reads
539836880088
reported
n content pct
0.012
measured
pct q20 bases
90.9
measured
pct q30 bases
67.1
measured
gc content pct
39.3
measured
mean read length
36
measured
mean base quality
28.8
measured
adapter content pct
0.44
measured
duplication rate pct
17.16
measured
How this grade was computed
The insufficient grade is a transparent weighted average. Each metric below scored from 0–100% against the published ATAC-seq thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
67.1
measured
×1
0%
QC cost
24 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0