Corpus 1,277 assessed · 1,178 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJNA508481

BioProject first seen 2019

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

93/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This feces metagenome amplicon dataset on an Illumina MiSeq platform contains 4 million reads with 88% Q30 bases, providing a small-scale gut microbiota snapshot. Researchers needing focused single-sample or low-diversity microbiome data for pilot studies or method development will find this dataset useful; however, the limited read depth restricts comprehensive community profiling and detection of rare bacterial members.

Data type / assay
amplicon
Organism
feces metagenome
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
103 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 2016628500 reported
total reads 4033257 reported
n content pct 0 measured
pct q20 bases 91.6 measured
pct q30 bases 88 measured
gc content pct 55.5 measured
mean read length 250 measured
mean base quality 34.2 measured
adapter content pct 0.01 measured
duplication rate pct 94.92 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 93/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 88 measured ×1 90%
adapter content pct 0.01 measured ×0.5 100%
QC cost 2 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0