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Provenance — who produced it, who reused it
Linked to 2 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
2 further papers cite this accession but reuse could not be confirmed.
Deep data QC
82/100 · BStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
WGS
Organism
Saccharomyces cerevisiae
Instrument
Illumina HiSeq 4000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
167 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
243904629000
reported
total reads
813015430
reported
mean coverage
20325.4
extrapolated
n content pct
0.011
measured
pct q20 bases
98.5
measured
pct q30 bases
95.8
measured
gc content pct
38.6
measured
mean read length
150
measured
mean base quality
39.3
measured
adapter content pct
2.67
measured
duplication rate pct
41.96
measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 82/100
The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.
mean coverage
20325.4
extrapolated
×1.2
100%
pct q30 bases
95.8
measured
×1
100%
duplication rate pct
41.96
measured
×0.5
0%
adapter content pct
2.67
measured
×0.4
88%
QC cost
34 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0