Corpus 1,276 assessed · 1,177 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJNA510570

BioProject first seen 2019

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This large-scale human amplicon dataset on an Illumina MiSeq generated 233 million reads with 91% Q30 bases, enabling population-scale microbiome or genomic studies across many individuals. Researchers investigating human microbiota diversity, disease associations, or population-level variation will benefit from sufficient depth for comprehensive community profiling and rare-variant detection. The uniform Q30 quality supports stringent filtering for downstream analyses.

Data type / assay
amplicon
Organism
Homo sapiens
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
808 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 74897652410 reported
total reads 232601405 reported
n content pct 0 measured
pct q20 bases 93 measured
pct q30 bases 91 measured
gc content pct 45.7 measured
mean read length 179 measured
mean base quality 35.8 measured
adapter content pct 0.17 measured
duplication rate pct 77.5 measured
mean target coverage 1208 extrapolated
How this grade was computed
Weighted mean of 2 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 91 measured ×1 100%
adapter content pct 0.17 measured ×0.5 100%
QC cost 5 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0