Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
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PRJNA510713

BioProject first seen 2019

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

61/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Human gut metagenome amplicon-seq on MiSeq generates 7.6 billion bases (12.7 million reads) with moderate quality (78.2% Q30 bases), suitable for microbiota composition profiling. The dataset provides good sample coverage for assessing microbial diversity; moderate quality is typical for amplicon surveys and sufficient for OTU-level or species-level taxonomic assignment.

Data type / assay
amplicon
Organism
human gut metagenome
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
93 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 7614741910 reported
total reads 12673349 reported
n content pct 0.001 measured
pct q20 bases 88 measured
pct q30 bases 78.2 measured
gc content pct 52.1 measured
mean read length 300.6 measured
mean base quality 32.8 measured
adapter content pct 0 measured
duplication rate pct 97.39 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 61/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 78.2 measured ×1 41%
adapter content pct 0 measured ×0.5 100%
QC cost 11 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0