PRJNA524114

BioProject first seen 2019

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

86/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

HiSeq 2500 whole-genome sequencing of Pseudomonas aeruginosa UCBPP-PA14 reference strain with 41 million short reads and 12.5 Gb at moderate quality (94.6% Q20, 87.1% Q30). Enables comparative genomics and variant validation against wild-type P. aeruginosa isolates.

Data type / assay

WGS

Organism

Pseudomonas aeruginosa UCBPP-PA14

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

26 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 12457220650 reported

total reads 41249075 reported

n content pct 0.033 measured

pct q20 bases 94.6 measured

pct q30 bases 87.1 measured

gc content pct 66.2 measured

mean read length 151 measured

mean base quality 33.4 measured

adapter content pct 3.05 measured

duplication rate pct 11.74 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 86/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 87.1 measured ×1 86%

duplication rate pct 11.74 measured ×0.5 88%

adapter content pct 3.05 measured ×0.4 85%

QC cost 20 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0