Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
← Dataset search

PRJNA524130

BioProject

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

83/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

16S amplicon sequencing (MiSeq) with solid quality; Q30=85% is the primary limiting metric while mean base quality of 34 remains strong; long reads (246.4bp) support good taxonomic resolution despite expected high amplicon duplication.

Data type / assay
amplicon
Organism
gut metagenome
Instrument
Illumina MiSeq
Platform
ILLUMINA
N numbers (samples, groups)
425 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 21183844887 reported
total reads 42515634 reported
n content pct 0 measured
pct q20 bases 90.4 measured
pct q30 bases 85 measured
gc content pct 55.6 measured
mean read length 246.4 measured
mean base quality 34 measured
adapter content pct 0 measured
duplication rate pct 90.78 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 83/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 85 measured ×1 75%
adapter content pct 0 measured ×0.5 100%
QC cost 2 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0

Scientific quality

Based on hands-on reproduction of the papers that use this dataset. A reproducible paper that stands on this data is positive evidence; a flagged one is a prompt to look closer — never a verdict on the dataset itself without the evidence.

1 studies use it 1 reproduced mean score 93