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Provenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
1 further paper cites this accession but reuse could not be confirmed.
Deep data QC
78/100 · CStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
WGS
Organism
Sus scrofa
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
202 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
95786733133
reported
total reads
777372089
reported
mean coverage
38.3
extrapolated
n content pct
0
measured
pct q20 bases
94.8
measured
pct q30 bases
86.3
measured
gc content pct
52.6
measured
mean read length
127.9
measured
mean base quality
36.7
measured
adapter content pct
0
measured
duplication rate pct
54.89
measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 78/100
The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.
mean coverage
38.3
extrapolated
×1.2
100%
pct q30 bases
86.3
measured
×1
82%
duplication rate pct
54.89
measured
×0.5
0%
adapter content pct
0
measured
×0.4
100%
QC cost
22 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0