Corpus 1,275 assessed · 1,176 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74.1/100
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PRJNA527988

BioProject first seen 2019

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

89/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Food-production metagenome amplicon-seq on MiSeq yields 5.8 billion bases (13.5 million reads) with moderate quality (86.7% Q30 bases) but notably elevated N content (5.62%), indicating some sequencing uncertainty. The dataset captures microbial communities in food environments; elevated N content warrants quality filtering, but the size permits microbiota profiling relevant to food safety and fermentation studies.

Data type / assay
amplicon
Organism
food production metagenome
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
234 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 5824920370 reported
total reads 13562247 reported
n content pct 5.62 measured
pct q20 bases 89.2 measured
pct q30 bases 86.7 measured
gc content pct 47.2 measured
mean read length 181.7 measured
mean base quality 33.9 measured
adapter content pct 0 measured
duplication rate pct 93.88 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 89/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 86.7 measured ×1 84%
adapter content pct 0 measured ×0.5 100%
QC cost 3 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0