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Provenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
1 further paper cites this accession but reuse could not be confirmed.
Deep data QC
67/100 · DStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
amplicon
Organism
Escherichia coli
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
217 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
53284410400
reported
total reads
175871604
reported
n content pct
0.003
measured
pct q20 bases
94.8
measured
pct q30 bases
90.4
measured
gc content pct
49.5
measured
mean read length
150
measured
mean base quality
33.9
measured
adapter content pct
35.5
measured
duplication rate pct
16.27
measured
mean target coverage
579178.4
extrapolated
How this grade was computed
Weighted mean of 2 scored metric(s) → 67/100
The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
90.4
measured
×1
100%
adapter content pct
35.5
measured
×0.5
0%
QC cost
20 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0