PRJNA531928

BioProject first seen 2024

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

454-platform amplicon of mouse gut metagenome. Excellent QC: 93.7% bases at Q30 and mean quality 36.1, with zero adapter contamination. High duplication (96%) is expected for targeted amplicon. All metrics measured. Ready for reuse.

Data type / assay

amplicon

Organism

mouse gut metagenome

Instrument

454 GS

Platform

LS454

Files available

FASTQ (raw reads)

N numbers (samples, groups)

362 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 1831708796 reported

total reads 3651784 reported

n content pct 0.011 measured

pct q20 bases 96 measured

pct q30 bases 93.7 measured

gc content pct 54.5 measured

mean read length 251 measured

mean base quality 36.1 measured

adapter content pct 0 measured

duplication rate pct 96.05 measured

How this grade was computed

Weighted mean of 2 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 93.7 measured ×1 100%

adapter content pct 0 measured ×0.5 100%

QC cost 1 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0