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Provenance — who produced it, who reused it
Linked to 2 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
2 further papers cite this accession but reuse could not be confirmed.
Deep data QC
67/100 · DStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
bulk-RNA-seq
Organism
Bacteroides thetaiotaomicron VPI-5482
Instrument
NextSeq 550
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
4 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
10982105300
reported
total reads
219642106
reported
n content pct
0
measured
pct q20 bases
96.4
measured
pct q30 bases
95
measured
gc content pct
50
measured
mean read length
50
measured
mean base quality
34.5
measured
adapter content pct
49.05
measured
duplication rate pct
80.24
measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 67/100
The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
95
measured
×1
100%
mean base quality
34.5
measured
×0.6
100%
adapter content pct
49.05
measured
×0.4
0%
duplication rate pct
80.24
measured
×0.4
0%
QC cost
20 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0