Corpus 1,277 assessed · 1,178 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJNA547828

BioProject first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

50/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

MiSeq amplicon sequencing of Hepatitis B virus with 4.4 million short reads and 839 Mb at good quality (90.4% Q20, 85% Q30). Enables HBV quasispecies profiling and antiviral drug resistance monitoring in infected individuals.

Data type / assay
amplicon
Organism
Hepatitis B virus
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
84 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 839300680 reported
total reads 4417372 reported
n content pct 0 measured
pct q20 bases 90.4 measured
pct q30 bases 85 measured
gc content pct 45.6 measured
mean read length 190 measured
mean base quality 34.1 measured
adapter content pct 67.2 measured
duplication rate pct 47.12 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 50/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 85 measured ×1 75%
adapter content pct 67.2 measured ×0.5 0%
QC cost 1 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0