Corpus 1,275 assessed · 1,176 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74.1/100
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PRJNA549760

BioProject first seen 2019

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

84/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Whole-genome sequencing of Saccharomyces cerevisiae via Illumina HiSeq 3000, generating 4.6 billion short reads (522 billion bases) with extrapolated 43,536× coverage—an extraordinarily deep yeast genome survey for strain characterization and population genomics. Supports de novo repeat element mapping, structural variant discovery, and allele-frequency analysis across the compact yeast genome; the 92% Q30 and minimal N-content (0.119%) provide unparalleled depth for calling low-frequency mutations and distinguishing true variants from sequencing error. This ultra-deep resource is ideal for mutation accumulation studies and genetic background reconstruction in laboratory yeast strains.

Data type / assay
WGS
Organism
Saccharomyces cerevisiae
Instrument
Illumina HiSeq 3000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
32 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 522433721201 reported
total reads 4578832603 reported
mean coverage 43536.1 extrapolated
n content pct 0.119 measured
pct q20 bases 97.5 measured
pct q30 bases 92 measured
gc content pct 40 measured
mean read length 121.1 measured
mean base quality 35.9 measured
adapter content pct 0 measured
duplication rate pct 74.51 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 84/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 43536.1 extrapolated ×1.2 100%
pct q30 bases 92 measured ×1 100%
duplication rate pct 74.51 measured ×0.5 0%
adapter content pct 0 measured ×0.4 100%
QC cost 18 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0