Corpus 1,277 assessed · 1,178 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJNA553870

BioProject first seen 2022

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

16S amplicon survey of chicken gut microbiota via Illumina HiSeq 2000, delivering 40 million reads (10 billion bases) with good quality (97.5% Q20, 92.5% Q30) and zero N content. Characterizes avian intestinal bacterial communities across poultry production systems; the 52.7% GC reflects the typical cecal and fecal microbiota composition in chickens. The substantial read depth enables robust assessment of alpha/beta diversity, pathogenic colonization dynamics (e.g., Salmonella), and probiotic efficacy in commercial poultry operations.

Data type / assay
amplicon
Organism
chicken gut metagenome
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
210 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 10052560592 reported
total reads 40374011 reported
n content pct 0 measured
pct q20 bases 97.5 measured
pct q30 bases 92.5 measured
gc content pct 52.7 measured
mean read length 124.4 measured
mean base quality 38.5 measured
adapter content pct 0 measured
duplication rate pct 97.06 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 92.5 measured ×1 100%
adapter content pct 0 measured ×0.5 100%
QC cost 2 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0