Corpus 1,280 assessed · 1,181 scored · 646 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJNA554163

BioProject first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

80/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Saccharomyces cerevisiae WGS from an Illumina HiSeq 2500 with extraordinary depth (9,941-fold coverage) and 95% Q30, totaling 119 billion bases across 397 million reads. This ultra-deep coverage enables detection of rare mutations, structural variants, and heterozygous sites even in haploid genomes.

Data type / assay
WGS
Organism
Saccharomyces cerevisiae
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
198 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 119296228200 reported
total reads 397654094 reported
mean coverage 9941.4 extrapolated
n content pct 0 measured
pct q20 bases 97.9 measured
pct q30 bases 94.9 measured
gc content pct 40.8 measured
mean read length 150 measured
mean base quality 35.9 measured
adapter content pct 33.92 measured
duplication rate pct 22.8 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 80/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 9941.4 extrapolated ×1.2 100%
pct q30 bases 94.9 measured ×1 100%
duplication rate pct 22.8 measured ×0.5 54%
adapter content pct 33.92 measured ×0.4 0%
QC cost 34 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0