Corpus 1,277 assessed · 1,178 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJNA557576

BioProject first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

16S amplicon survey of the red swamp crayfish (Procambarus clarkii) via Illumina MiSeq, delivering 280,000 reads with excellent sequence fidelity (98.3% Q20, 94.2% Q30) and zero N content. Characterizes crustacean-associated microbiota; the minimal quality compromises and balanced 50.2% GC make this dataset particularly suitable for downstream ASV inference and phylogenetic placement. The smaller read count may limit statistical power for rare taxon detection but poses no technical barrier to community profiling in this arthropod model.

Data type / assay
amplicon
Organism
Procambarus clarkii
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
5 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 168487760 reported
total reads 279880 reported
n content pct 0 measured
pct q20 bases 98.3 measured
pct q30 bases 94.2 measured
gc content pct 50.2 measured
mean read length 301 measured
mean base quality 36.5 measured
adapter content pct 0 measured
duplication rate pct 98.63 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 94.2 measured ×1 100%
adapter content pct 0 measured ×0.5 100%
QC cost 2 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0