Corpus 1,277 assessed · 1,178 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJNA559386

BioProject first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

47/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Oxford Nanopore MinION long-read WGA of mouse gut metagenome with 7M reads and minimal short-read equivalent bases (0% Q30), useful for recovery of long metagenomic contigs. Limited accuracy per read suitable for structural context and assembly continuity rather than polished consensus.

Data type / assay
WGS
Organism
mouse gut metagenome
Instrument
MinION
Platform
OXFORD_NANOPORE
Read type
long-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
5 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 18038704834 reported
total reads 6993507 reported
n content pct 0 measured
pct q20 bases 16 measured
pct q30 bases 0 measured
gc content pct 45.5 measured
mean read length 2680.7 measured
mean base quality 12.1 measured
adapter content pct 0.01 measured
duplication rate pct 0.09 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 47/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 0 measured ×1 0%
duplication rate pct 0.09 measured ×0.5 100%
adapter content pct 0.01 measured ×0.4 100%
QC cost 52 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0