Corpus 1,277 assessed · 1,178 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJNA559513

BioProject first seen 2019

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

16S amplicon profiling of an unspecified metagenome via Illumina MiSeq, yielding 7.4 million reads (3.7 billion bases) with moderate quality (93.9% Q20, 90.4% Q30) and zero N content. Characterizes microbial community composition in environmental or clinical specimens; the 51.9% GC and moderate base fidelity support taxonomy assignment and abundance estimation of dominant taxa. Adequate read depth for preliminary diversity surveys, though statistical power for rare taxa detection may be limited; quality is sufficient for standard amplicon workflows without aggressive trimming.

Data type / assay
amplicon
Organism
metagenome
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
188 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 3695812008 reported
total reads 7374878 reported
n content pct 0 measured
pct q20 bases 93.9 measured
pct q30 bases 90.4 measured
gc content pct 51.9 measured
mean read length 251 measured
mean base quality 35.2 measured
adapter content pct 0 measured
duplication rate pct 94.88 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 90.4 measured ×1 100%
adapter content pct 0 measured ×0.5 100%
QC cost 4 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0