PRJNA560680

BioProject

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

86/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

RNA-seq of the barnacle *Semibalanus balanoides* via HiSeq X Ten combining short and long reads with very high depth (11.6B reads) and moderate-to-low quality (91.5% Q20). Exceptional depth supports transcriptome assembly in this intertidal organism; quality variability may reflect technical issues or mixed read populations.

Data type / assay

bulk-RNA-seq

Organism

Semibalanus balanoides

Instrument

HiSeq X Ten

Platform

ILLUMINA

Read type

hybrid (short+long)

Files available

FASTQ (raw reads)

N numbers (samples, groups)

38 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 3483409956395 reported

total reads 11638491518 reported

n content pct 0.022 measured

pct q20 bases 91.5 measured

pct q30 bases 83.4 measured

gc content pct 46.9 measured

mean read length 151 measured

mean base quality 35.9 measured

adapter content pct 2 measured

duplication rate pct 8.12 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 86/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 83.4 measured ×1 67%

mean base quality 35.9 measured ×0.6 100%

adapter content pct 2 measured ×0.4 100%

duplication rate pct 8.12 measured ×0.4 100%

QC cost 17 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0