Corpus 1,277 assessed · 1,178 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJNA563122

BioProject first seen 2019

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Mouse amplicon data with excellent measured Q30 (95.7%) and zero adapter contamination, supporting an A-grade. However, mean target coverage (2.2×) is extrapolated rather than measured; a deep measured pass on coverage is pending before absolute reuse confidence.

Data type / assay
amplicon
Organism
Mus musculus
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
46 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 118322465 reported
total reads 508998 reported
n content pct 0 measured
pct q20 bases 96.5 measured
pct q30 bases 95.7 measured
gc content pct 54.9 measured
mean read length 232.3 measured
mean base quality 36.9 measured
adapter content pct 0 measured
duplication rate pct 90.76 measured
mean target coverage 2.2 extrapolated
How this grade was computed
Weighted mean of 2 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95.7 measured ×1 100%
adapter content pct 0 measured ×0.5 100%
QC cost 1 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0