Corpus 1,277 assessed · 1,178 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJNA564144

BioProject first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

16S amplicon profiling of mouse gut microbiota via Illumina MiSeq, comprising 2 million reads (511 million bases) with outstanding quality (99% Q20, 94.9% Q30) and zero N content. Provides microbiota characterization in laboratory mice with exceptional sequence fidelity; the 53.4% GC reflects typical murine fecal community composition. Though the read count is modest, the flawless quality enables reliable taxonomy assignment and alpha/beta diversity inference without QC filtering overhead, suitable for small-scale intervention studies or longitudinal microbiota tracking.

Data type / assay
amplicon
Organism
mouse gut metagenome
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
68 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 511097559 reported
total reads 2047887 reported
n content pct 0 measured
pct q20 bases 99 measured
pct q30 bases 94.9 measured
gc content pct 53.4 measured
mean read length 253.8 measured
mean base quality 36.7 measured
adapter content pct 0.02 measured
duplication rate pct 97.35 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 94.9 measured ×1 100%
adapter content pct 0.02 measured ×0.5 100%
QC cost 3 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0