Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
← Dataset search

PRJNA564944

BioProject first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

68/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

16S amplicon survey of an unspecified metagenome via Illumina MiSeq, producing 15.6 million reads (4.6 billion bases) with moderate quality (87.4% Q20, 83% Q30) and zero N content. Suitable for microbial community profiling and baseline diversity assessment; the 51.8% GC and moderate base fidelity are adequate for OTU/ASV inference with standard quality gatekeeping. The lower Q30 compared to premium amplicon datasets may require more stringent quality filtering, though the read depth compensates and enables reasonable statistical power for dominant taxon abundance estimation.

Data type / assay
amplicon
Organism
metagenome
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
25 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 4616895169 reported
total reads 15603323 reported
n content pct 0 measured
pct q20 bases 87.4 measured
pct q30 bases 83 measured
gc content pct 51.8 measured
mean read length 163.7 measured
mean base quality 34.3 measured
adapter content pct 4.84 measured
duplication rate pct 74.06 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 68/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 83 measured ×1 65%
adapter content pct 4.84 measured ×0.5 73%
QC cost 1 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0