Corpus 1,275 assessed · 1,176 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74.1/100
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PRJNA574931

BioProject first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

80/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Illumina MiSeq amplicon sequencing of mouse samples with 27M reads at moderate-to-good quality (93.1% Q20, 87.2% Q30), suitable for abundance profiling and variant discovery in targeted genomic regions. Balanced GC (50.1%) indicates standard amplicon design.

Data type / assay
amplicon
Organism
Mus musculus
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
77 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 16406394636 reported
total reads 27279445 reported
n content pct 0.001 measured
pct q20 bases 93.1 measured
pct q30 bases 87.2 measured
gc content pct 50.1 measured
mean read length 300.7 measured
mean base quality 34.8 measured
adapter content pct 5.35 measured
duplication rate pct 58.68 measured
mean target coverage 303.8 extrapolated
How this grade was computed
Weighted mean of 2 scored metric(s) → 80/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 87.2 measured ×1 86%
adapter content pct 5.35 measured ×0.5 69%
QC cost 11 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0