PRJNA575880

BioProject first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

85/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Amplicon metagenome (crustacean). Grade B (85/100) — good amplicon data with minor reservations. Q30 bases at 85.5% (measured) are slightly below the ideal 90%+, marginally reducing confidence in low-abundance variant calls; duplication is high (86.68%) but expected and managed well in amplicon workflows, and read length (408.6 bp, measured) is favorable for deep sequencing.

Data type / assay

amplicon

Organism

crustacean metagenome

Instrument

Illumina MiSeq

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

24 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 108142442 reported

total reads 403032 reported

n content pct 0 measured

pct q20 bases 90.8 measured

pct q30 bases 85.5 measured

gc content pct 54.5 measured

mean read length 408.6 measured

mean base quality 34.4 measured

adapter content pct 0 measured

duplication rate pct 86.68 measured

How this grade was computed

Weighted mean of 2 scored metric(s) → 85/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 85.5 measured ×1 78%

adapter content pct 0 measured ×0.5 100%

QC cost 3 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0