Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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PRJNA576334

BioProject first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

20/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Human miRNA-seq from an Illumina HiSeq 3000 with 49 million reads at 71% Q30, totaling 14.8 billion bases. The moderate quality and coverage enable profiling of miRNA dysregulation in disease but may be limiting for lowly-expressed rare miRNAs.

Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Instrument
Illumina HiSeq 3000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
4 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 14850347170 reported
total reads 49173335 reported
n content pct 0.002 measured
pct q20 bases 79 measured
pct q30 bases 71.4 measured
gc content pct 59.5 measured
mean read length 151 measured
mean base quality 32.2 measured
adapter content pct 97.54 measured
duplication rate pct 87.49 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 20/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 71.4 measured ×1 7%
mean base quality 32.2 measured ×0.6 70%
adapter content pct 97.54 measured ×0.4 0%
duplication rate pct 87.49 measured ×0.4 0%
QC cost 51 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0