Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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PRJNA577228

BioProject

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

68/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay
WGS
Organism
Oryza sativa
Instrument
HiSeq X Ten
Platform
ILLUMINA
Read type
hybrid (short+long)
Files available
FASTQ (raw reads)
N numbers (samples, groups)
10 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 102707534643 reported
total reads 160731312 reported
mean coverage 238.9 extrapolated
n content pct 0 measured
pct q20 bases 0 measured
pct q30 bases 0 measured
gc content pct 44.6 measured
mean read length 20269.5 measured
mean base quality 0 measured
adapter content pct 0.03 measured
duplication rate pct 0 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 68/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 238.9 extrapolated ×1.2 100%
pct q30 bases 0 measured ×1 0%
duplication rate pct 0 measured ×0.5 100%
adapter content pct 0.03 measured ×0.4 100%
QC cost 45 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0

Scientific quality

Based on hands-on reproduction of the papers that use this dataset. A reproducible paper that stands on this data is positive evidence; a flagged one is a prompt to look closer — never a verdict on the dataset itself without the evidence.

1 studies use it 1 reproduced mean score 99