PRJNA577229

BioProject

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

61/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Long-read WGS of Gallus gallus via PacBio RS II. Grade D, 61/100 with evidence_strength=0.61 and extrapolated coverage 0.1x—utterly insufficient for assembly or variant discovery. Perfect measured read qualities (Q30 100%) cannot overcome the sparse ~8.6k reads, leaving >99.9% of the genome unrepresented. Do not reuse for genomic inference.

Data type / assay

WGS

Organism

Gallus gallus

Instrument

PacBio RS II

Platform

PACBIO_SMRT

Read type

long-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 79367769 reported

total reads 8654 reported

mean coverage 0.1 extrapolated

n content pct 0 measured

pct q20 bases 100 measured

pct q30 bases 100 measured

gc content pct 63 measured

mean read length 9171.2 measured

mean base quality 30 measured

adapter content pct 0 measured

duplication rate pct 0 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 61/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 0.1 extrapolated ×1.2 0%

pct q30 bases 100 measured ×1 100%

duplication rate pct 0 measured ×0.5 100%

adapter content pct 0 measured ×0.4 100%

QC cost 10 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0