Corpus 1,275 assessed · 1,176 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74.1/100
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PRJNA577841

BioProject first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

86/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Illumina HiSeq 2500 WGS of fruit fly (Drosophila melanogaster) with extraordinarily high depth (~4270x coverage from 2.4B reads), enabling comprehensive structural variant detection and population genomics. Exceptional coverage of model organism supports high-confidence de novo assembly.

Data type / assay
WGS
Organism
Drosophila melanogaster
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
24 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 597902149750 reported
total reads 2391608599 reported
mean coverage 4270.7 extrapolated
n content pct 0.013 measured
pct q20 bases 89.8 measured
pct q30 bases 81.2 measured
gc content pct 41.6 measured
mean read length 125 measured
mean base quality 33.7 measured
adapter content pct 0.21 measured
duplication rate pct 2.92 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 86/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 4270.7 extrapolated ×1.2 100%
pct q30 bases 81.2 measured ×1 56%
duplication rate pct 2.92 measured ×0.5 100%
adapter content pct 0.21 measured ×0.4 100%
QC cost 36 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0