PRJNA578156

BioProject first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

58/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

This mouse amplicon dataset from MiSeq totals 5.8 billion bases with high quality (87.3% Q30). The dataset supports targeted amplicon studies in rodent samples.

Data type / assay

amplicon

Organism

Mus musculus

Instrument

Illumina MiSeq

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

107 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 5762581262 reported

total reads 23683795 reported

n content pct 0 measured

pct q20 bases 90.5 measured

pct q30 bases 87.3 measured

gc content pct 46.2 measured

mean read length 240 measured

mean base quality 35.5 measured

adapter content pct 91.26 measured

duplication rate pct 94.92 measured

mean target coverage 106.7 extrapolated

How this grade was computed

Weighted mean of 2 scored metric(s) → 58/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 87.3 measured ×1 87%

adapter content pct 91.26 measured ×0.5 0%

QC cost 13 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0