PRJNA578299

BioProject first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

74/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

MiSeq whole-genome sequencing of the lactic acid bacterium Lactobacillus delbrueckii with excellent quality (99% Q20) and expected low GC content (36.5%), adequate for complete genome assembly and probiotic strain characterization.

Data type / assay

WGS

Organism

Lactobacillus delbrueckii

Instrument

Illumina MiSeq

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

3 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 1154087610 reported

total reads 4058612 reported

n content pct 0.071 measured

pct q20 bases 99 measured

pct q30 bases 96.6 measured

gc content pct 36.5 measured

mean read length 143.1 measured

mean base quality 36.9 measured

adapter content pct 0 measured

duplication rate pct 39.3 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 74/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96.6 measured ×1 100%

duplication rate pct 39.3 measured ×0.5 2%

adapter content pct 0 measured ×0.4 100%

QC cost 53 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0