Corpus 1,283 assessed · 1,184 scored · 647 reproduced ≥75 · 173 flagged ·∅ 73.9/100
← Dataset search

PRJNA578816

BioProject first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

0/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Oxford Nanopore GridION long-read amplicon of Chikungunya virus yielding 377M hybrid reads with characteristic low per-read accuracy (16.7% Q20, 0.2% Q30) of 1D+ chemistry. Valuable for resolving full-length viral haplotypes and complex genome structure despite limited read accuracy.

Data type / assay
amplicon
Organism
Chikungunya virus
Instrument
GridION
Platform
ILLUMINA
Read type
hybrid (short+long)
Files available
FASTQ (raw reads)
N numbers (samples, groups)
319 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 74903364959 reported
total reads 377127278 reported
n content pct 0 measured
pct q20 bases 16.7 measured
pct q30 bases 0.2 measured
gc content pct 49.7 measured
mean read length 270 measured
mean base quality 11.6 measured
adapter content pct 19.8 measured
duplication rate pct 16.96 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 0/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 0.2 measured ×1 0%
adapter content pct 19.8 measured ×0.5 0%
QC cost 15 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0