Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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PRJNA578920

BioProject first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

47/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Oxford Nanopore MinION long-read WGS of laboratory E. coli strain (K-12 DH10B) with 2.8M reads and no short-read equivalent (0% Q20/Q30—characteristic 1D raw chemistry), useful for resolving complete genome sequence and mobile element structure. Long reads enable gap-free assembly.

Data type / assay
WGS
Organism
Escherichia coli str. K-12 substr. DH10B
Instrument
MinION
Platform
OXFORD_NANOPORE
Read type
long-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
7 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 20467582530 reported
total reads 2787885 reported
n content pct 0 measured
pct q20 bases 0 measured
pct q30 bases 0 measured
gc content pct 50.4 measured
mean read length 2933.9 measured
mean base quality 0 measured
adapter content pct 0 measured
duplication rate pct 0.14 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 47/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 0 measured ×1 0%
duplication rate pct 0.14 measured ×0.5 100%
adapter content pct 0 measured ×0.4 100%
QC cost 19 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0