Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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PRJNA587095

BioProject first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

77/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

WGS (A. baumannii, NextSeq 500), grade C=77/100. Q30 at 83.6% (scored 68/100) is the primary limiter, falling below A/B thresholds; duplication at 15.06% (scored 78/100) is acceptable. Large depth (71M reads) and mean quality 32.6 permit assembly and variant calling but lower Q30 reduces small-variant sensitivity.

Data type / assay
WGS
Organism
Acinetobacter baumannii
Instrument
NextSeq 500
Platform
ILLUMINA
N numbers (samples, groups)
19 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 20747766022 reported
total reads 71119988 reported
n content pct 0.001 measured
pct q20 bases 91.4 measured
pct q30 bases 83.6 measured
gc content pct 52.8 measured
mean read length 148 measured
mean base quality 32.6 measured
adapter content pct 0 measured
duplication rate pct 15.06 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 77/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 83.6 measured ×1 68%
duplication rate pct 15.06 measured ×0.5 78%
adapter content pct 0 measured ×0.4 100%
QC cost 32 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0

Scientific quality

Based on hands-on reproduction of the papers that use this dataset. A reproducible paper that stands on this data is positive evidence; a flagged one is a prompt to look closer — never a verdict on the dataset itself without the evidence.

1 studies use it 1 reproduced mean score 100