Corpus 1,280 assessed · 1,181 scored · 646 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJNA587452

BioProject first seen 2019

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

94/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

MiSeq hybrid amplicon sequencing (short+long reads) of a synthetic microbial community combines short-read accuracy with longer contextual reads, making this dataset valuable for benchmarking taxonomic assignment algorithms on known-composition mock communities.

Data type / assay
amplicon
Organism
synthetic metagenome
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
hybrid (short+long)
Files available
FASTQ (raw reads)
N numbers (samples, groups)
23 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 3822070980 reported
total reads 5080468 reported
n content pct 0.135 measured
pct q20 bases 94.3 measured
pct q30 bases 88.2 measured
gc content pct 53.6 measured
mean read length 248.4 measured
mean base quality 35 measured
adapter content pct 0 measured
duplication rate pct 62.1 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 94/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 88.2 measured ×1 91%
adapter content pct 0 measured ×0.5 100%
QC cost 1 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0