PRJNA588959

BioProject first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

98/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

MiniSeq amplicon profiling of human fecal microbiota with solid quality (95.6% Q20, zero N-content) across ~2 million reads; offers practical microbiome composition analysis using a compact sequencing platform suitable for smaller laboratories.

Data type / assay

amplicon

Organism

feces metagenome

Instrument

Illumina MiniSeq

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

40 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 1218793548 reported

total reads 2024574 reported

n content pct 0 measured

pct q20 bases 95.6 measured

pct q30 bases 89.5 measured

gc content pct 53.6 measured

mean read length 301 measured

mean base quality 35.4 measured

adapter content pct 0 measured

duplication rate pct 97.77 measured

How this grade was computed

Weighted mean of 2 scored metric(s) → 98/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 89.5 measured ×1 98%

adapter content pct 0 measured ×0.5 100%

QC cost 5 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0