Corpus 1,276 assessed · 1,177 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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PRJNA591294

BioProject first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

72/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Bulk transcriptome of Homo sapiens via Illumina HiSeq 2500, yielding 479 million short reads (144.9 billion bases) with exceptional quality (98.2% Q20, 94.6% Q30) and zero N content. Supports comprehensive gene expression profiling, isoform discovery, and splice-junction analysis across human tissues or cell types; the 51.7% GC and pristine base fidelity enable sensitive quantification across the full dynamic range of transcript expression. This exceptionally clean, high-depth dataset is ideal for transcriptome atlases and discovery of tissue-restricted or allele-specific expression patterns.

Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
8 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 144901476326 reported
total reads 479806213 reported
n content pct 0 measured
pct q20 bases 98.2 measured
pct q30 bases 94.6 measured
gc content pct 51.7 measured
mean read length 151 measured
mean base quality 36.1 measured
adapter content pct 43.87 measured
duplication rate pct 59.72 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 72/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 94.6 measured ×1 100%
mean base quality 36.1 measured ×0.6 100%
adapter content pct 43.87 measured ×0.4 0%
duplication rate pct 59.72 measured ×0.4 34%
QC cost 27 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0