PRJNA593713

BioProject

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

bulk-RNA-seq

Organism

Mus musculus

Instrument

Illumina HiSeq 4000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

42 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 270534912000 reported

total reads 901783040 reported

n content pct 0 measured

pct q20 bases 96.9 measured

pct q30 bases 92.3 measured

gc content pct 50.6 measured

mean read length 150 measured

mean base quality 35.6 measured

adapter content pct 0 measured

duplication rate pct 22.77 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 92.3 measured ×1 100%

mean base quality 35.6 measured ×0.6 100%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 22.77 measured ×0.4 100%

QC cost 23 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0