Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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PRJNA594153

BioProject

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

87/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Whole-genome sequencing of S. cerevisiae. Grade B (87/100) but evidence strength is LOW (0.61): mean coverage of 17,690× is extrapolated rather than measured, and a deep measured validation pass is pending. Duplication at 32.85% is measured but concerns warrant confirmation before full reuse.

Data type / assay
WGS
Organism
Saccharomyces cerevisiae
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
N numbers (samples, groups)
119 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 212282544032 reported
total reads 726590702 reported
mean coverage 17690.2 extrapolated
n content pct 0.001 measured
pct q20 bases 97.1 measured
pct q30 bases 91.8 measured
gc content pct 37 measured
mean read length 147.1 measured
mean base quality 35.6 measured
adapter content pct 0 measured
duplication rate pct 32.85 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 87/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 17690.2 extrapolated ×1.2 100%
pct q30 bases 91.8 measured ×1 100%
duplication rate pct 32.85 measured ×0.5 22%
adapter content pct 0 measured ×0.4 100%
QC cost 4 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0

Scientific quality

Based on hands-on reproduction of the papers that use this dataset. A reproducible paper that stands on this data is positive evidence; a flagged one is a prompt to look closer — never a verdict on the dataset itself without the evidence.

1 studies use it 1 reproduced mean score 90