PRJNA595157

BioProject first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Massive-scale 16S amplicon sequencing from Homo sapiens on MiSeq with >32 billion reads and excellent quality (98.2% Q20, 97% Q30), providing exceptional depth for ultra-deep human microbiota profiling and rare OTU detection.

Data type / assay

amplicon

Organism

Homo sapiens

Instrument

Illumina MiSeq

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

8,564 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 9681494050529 reported

total reads 32348394897 reported

n content pct 0.055 measured

pct q20 bases 98.2 measured

pct q30 bases 97 measured

gc content pct 31.3 measured

mean read length 192.2 measured

mean base quality 37.5 measured

adapter content pct 0.14 measured

duplication rate pct 98.38 measured

mean target coverage 156153.1 extrapolated

How this grade was computed

Weighted mean of 2 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 97 measured ×1 100%

adapter content pct 0.14 measured ×0.5 100%

QC cost 1 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0