Corpus 1,280 assessed · 1,181 scored · 646 reproduced ≥75 · 170 flagged ·∅ 74/100
← Dataset search

PRJNA596333

BioProject first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

97/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Amplicon metagenome (feces). Grade A (97/100) — good reusable amplicon data with a notable caveat. Duplication rate is extremely high (98.5%, measured), suggesting heavy PCR bias or deep amplification that could distort relative abundance estimates in downstream analysis; however, Q30 bases at 89.1% (measured) are acceptable and all other quality metrics are clean, making this data viable with duplication-aware methods.

Data type / assay
amplicon
Organism
feces metagenome
Instrument
Illumina MiSeq
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
225 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 7499571520 reported
total reads 12457760 reported
n content pct 0 measured
pct q20 bases 96.3 measured
pct q30 bases 89.1 measured
gc content pct 54 measured
mean read length 301 measured
mean base quality 35.3 measured
adapter content pct 0 measured
duplication rate pct 98.5 measured
How this grade was computed
Weighted mean of 2 scored metric(s) → 97/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published amplicon thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 89.1 measured ×1 96%
adapter content pct 0 measured ×0.5 100%
QC cost 3 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0