Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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PRJNA602546

BioProject first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

99/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

Synthetic long-read sequencing of the human genome via Illumina HiSeq 2500 combining short and long reads to achieve ~3145x depth, enabling phasing of variants across extended haplotypes and detection of complex structural variants. Extreme coverage and hybrid-read approach optimize haplotype resolution over practical throughput.

Data type / assay
WGS
Organism
Homo sapiens
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
hybrid (short+long)
Files available
FASTQ (raw reads), BAM/CRAM (aligned)
N numbers (samples, groups)
238 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 9749834052065 reported
total reads 42737943995 reported
mean coverage 3145.1 extrapolated
n content pct 0 measured
pct q20 bases 97 measured
pct q30 bases 91.9 measured
gc content pct 40.7 measured
mean read length 150 measured
mean base quality 35.6 measured
adapter content pct 0.17 measured
duplication rate pct 9.43 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 99/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

mean coverage 3145.1 extrapolated ×1.2 100%
pct q30 bases 91.9 measured ×1 100%
duplication rate pct 9.43 measured ×0.5 96%
adapter content pct 0.17 measured ×0.4 100%
QC cost 18 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0